Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00656.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 387

Length: 646
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37


Found at i:28 original size:12 final size:12

Alignment explanation


    Indices: 11--36  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

          1 TCCACCGCCC

                        
         11 AGCTTTTATGAT
          1 AGCTTTTATGAT

                        
         23 AGCTTTTATGAT
          1 AGCTTTTATGAT

              
         35 AG
          1 AG

         37 TATCCTCTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46


Consensus pattern (12 bp):   
AGCTTTTATGAT
Done.