Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00672.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4075
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28


Found at i:2150 original size:24 final size:24

Alignment explanation


    Indices: 2121--2172  Score: 104
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2111 CATATACTTG

                                    
       2121 TGATAATGCCTCAGCAGTTTTTGA
          1 TGATAATGCCTCAGCAGTTTTTGA

                                    
       2145 TGATAATGCCTCAGCAGTTTTTGA
          1 TGATAATGCCTCAGCAGTTTTTGA

                
       2169 TGAT
          1 TGAT

       2173 GAAGGTACTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38


Consensus pattern (24 bp):   
TGATAATGCCTCAGCAGTTTTTGA

Found at i:3199 original size:102 final size:102

Alignment explanation


    Indices: 3018--3318  Score: 422
    Period size: 102  Copynumber: 3.0  Consensus size: 102

       3008 ATTTTGATTC

                           *        *            *         *  *         ***  
       3018 AGGAAATAGTGATTCCGATGAAGAACTTCCTAAAACACGTTCAAAGGTTCATTCAAGCATTGGTT
          1 AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGGCTCGTTCAAGCATAATTT

                     *               *   *  **   
       3083 TTTCTCACAAGACAACTGCCTCCCCGAATTCAGGAAA
         66 TTTCTCACAGGACAACTGCCTCCCCAAATGCACAAAA

                                                                       *     
       3120 AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGGCTCGTTCAAGCACAATTT
          1 AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGGCTCGTTCAAGCATAATTT

                   *              *              
       3185 TTTCTCATAGGACAACTGCCTCTCCAAATGCACAAAA
         66 TTTCTCACAGGACAACTGCCTCCCCAAATGCACAAAA

                                                          *             *    
       3222 AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGACTCGTTCAAGCATGATTT
          1 AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGGCTCGTTCAAGCATAATTT

                   *              *         
       3287 TTTCTCAGAGGACAACTGCCTCTCCAAATGCA
         66 TTTCTCACAGGACAACTGCCTCCCCAAATGCA

       3319 AGAAGAGGTT


Statistics
Matches: 179,  Mismatches: 20, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
 102  179  1.00

ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27


Consensus pattern (102 bp):   
AGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAAAGGCTCGTTCAAGCATAATTT
TTTCTCACAGGACAACTGCCTCCCCAAATGCACAAAA
Done.