Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00685.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34


Found at i:927 original size:44 final size:44

Alignment explanation


    Indices: 864--951  Score: 176
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        854 CCAGTCGACA

                                                        
        864 CTCATTTTCAGCTGATCTTAATAGTATTCCTGTATATTGGCATT
          1 CTCATTTTCAGCTGATCTTAATAGTATTCCTGTATATTGGCATT

                                                        
        908 CTCATTTTCAGCTGATCTTAATAGTATTCCTGTATATTGGCATT
          1 CTCATTTTCAGCTGATCTTAATAGTATTCCTGTATATTGGCATT

        952 TTTCTGTGTA


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45


Consensus pattern (44 bp):   
CTCATTTTCAGCTGATCTTAATAGTATTCCTGTATATTGGCATT
Done.