Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00692.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2949
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32


Found at i:2615 original size:23 final size:23

Alignment explanation


    Indices: 2579--2622  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       2569 AACAAAGATA

                          *        
       2579 AATTTAATTAAAGATATTTATGT
          1 AATTTAATTAAAGAAATTTATGT

                  *  *           
       2602 AATTTAGTTTAAGAAATTTAT
          1 AATTTAATTAAAGAAATTTAT

       2623 TTCGGATAGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   18  1.00

ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48


Consensus pattern (23 bp):   
AATTTAATTAAAGAAATTTATGT
Done.