Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00693.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 897
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33


Found at i:83 original size:6 final size:6

Alignment explanation


    Indices: 63--128  Score: 73
    Period size: 6  Copynumber: 11.2  Consensus size: 6

         53 AAAATTTTTC

                       *                                          * 
         63 TCCCCTT TCCTCT TCCCCT T-CCCT T-CCCT TCCCCT TCCCCT TCCCTT
          1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT

                *     *           
        110 TCCCTT TCCTCT TCCCCT T
          1 TCCCCT TCCCCT TCCCCT T

        129 GGGTTGCAAA


Statistics
Matches: 52,  Mismatches: 6, Indels: 3
        0.85            0.10        0.05

Matches are distributed among these distances:
   5   10  0.19
   6   38  0.73
   7    4  0.08

ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42


Consensus pattern (6 bp):   
TCCCCT

Done.