Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00695.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 797

Length: 1329
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:1214 original size:31 final size:31

Alignment explanation


    Indices: 1179--1240  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1169 AGAAGTTTCA

                                           
       1179 AAGATTTTAGTTTTAGAAGAAAGTATATACT
          1 AAGATTTTAGTTTTAGAAGAAAGTATATACT

                                      *    
       1210 AAGATTTTAGTTTTAGAAGAAAGTATGTACT
          1 AAGATTTTAGTTTTAGAAGAAAGTATATACT

       1241 GTAGTCATTA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.40, C:0.03, G:0.18, T:0.39


Consensus pattern (31 bp):   
AAGATTTTAGTTTTAGAAGAAAGTATATACT
Done.