Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00701.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2649
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2580 original size:53 final size:53

Alignment explanation


    Indices: 2517--2625  Score: 218
    Period size: 53  Copynumber: 2.1  Consensus size: 53

       2507 AACTTTTTAC

                                                                 
       2517 TATCGTTCCTTTTGTATGAATTTGTAAGTGTGATTTTTATATTAAAAATCGAA
          1 TATCGTTCCTTTTGTATGAATTTGTAAGTGTGATTTTTATATTAAAAATCGAA

                                                                 
       2570 TATCGTTCCTTTTGTATGAATTTGTAAGTGTGATTTTTATATTAAAAATCGAA
          1 TATCGTTCCTTTTGTATGAATTTGTAAGTGTGATTTTTATATTAAAAATCGAA

               
       2623 TAT
          1 TAT

       2626 AACGGTAATT


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   56  1.00

ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48


Consensus pattern (53 bp):   
TATCGTTCCTTTTGTATGAATTTGTAAGTGTGATTTTTATATTAAAAATCGAA
Done.