Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01370.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2744
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38


Found at i:1980 original size:16 final size:16

Alignment explanation


    Indices: 1959--1992  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1949 AAAGTATGCA

                             
       1959 TTCTA-TTGTTATTTTG
          1 TTCTATTTG-TATTTTG

                            
       1975 TTCTATTTGTATTTTG
          1 TTCTATTTGTATTTTG

              
       1991 TT
          1 TT

       1993 AGATTTCTGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16   14  0.82
  17    3  0.18

ACGTcount: A:0.12, C:0.06, G:0.12, T:0.71


Consensus pattern (16 bp):   
TTCTATTTGTATTTTG
Done.