Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00710.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7509
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:5688 original size:49 final size:49

Alignment explanation


    Indices: 5608--5701  Score: 129
    Period size: 49  Copynumber: 1.9  Consensus size: 49

       5598 AGTTTCTTGG

                                               *             
       5608 AATCATTCCTGTATGTCATGGTTCGAAAATCAAGTTGCAAAACAAAAGA
          1 AATCATTCCTGTATGTCATGGTTCGAAAATCAAGTCGCAAAACAAAAGA

                *             *                            
       5657 AATCGTTCCTGTATGAT-GTGGTTC-AATAATCAAGTCGCAAAACAA
          1 AATCATTCCTGTATG-TCATGGTTCGAA-AATCAAGTCGCAAAACAA

       5702 GAGGAAATTG


Statistics
Matches: 40,  Mismatches: 3, Indels: 4
        0.85            0.06        0.09

Matches are distributed among these distances:
  48    2  0.05
  49   37  0.93
  50    1  0.03

ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28


Consensus pattern (49 bp):   
AATCATTCCTGTATGTCATGGTTCGAAAATCAAGTCGCAAAACAAAAGA
Done.