Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00711.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1488
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27


Found at i:1475 original size:14 final size:14

Alignment explanation


    Indices: 1458--1488  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1448 AACCTAACCC

                     *    
       1458 AAAAAAAAACAAAG
          1 AAAAAAAAAAAAAG

                          
       1472 AAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAG

               
       1486 AAA
          1 AAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.90, C:0.03, G:0.06, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAAAAAAG
Done.