Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00711.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2903
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:2890 original size:14 final size:14

Alignment explanation


    Indices: 2873--2903  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       2863 AACCTAACCC

                     *    
       2873 AAAAAAAAACAAAG
          1 AAAAAAAAAAAAAG

                          
       2887 AAAAAAAAAAAAAG
          1 AAAAAAAAAAAAAG

               
       2901 AAA
          1 AAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.90, C:0.03, G:0.06, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAAAAAAG
Done.