Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00712.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1651
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30


Found at i:1450 original size:67 final size:67

Alignment explanation


    Indices: 1342--1478  Score: 256
    Period size: 67  Copynumber: 2.0  Consensus size: 67

       1332 CCAAAGTTTT

                  *                                                          
       1342 AGAAGCGTGGATGATTTCTAGTTATCGTTGCGACTTCAGTGTGAGAGTTGAGTAGCTATTGTGAT
          1 AGAAGCATGGATGATTTCTAGTTATCGTTGCGACTTCAGTGTGAGAGTTGAGTAGCTATTGTGAT

              
       1407 GA
         66 GA

                                                       *                     
       1409 AGAAGCATGGATGATTTCTAGTTATCGTTGCGACTTCAGTGTGGGAGTTGAGTAGCTATTGTGAT
          1 AGAAGCATGGATGATTTCTAGTTATCGTTGCGACTTCAGTGTGAGAGTTGAGTAGCTATTGTGAT

              
       1474 GA
         66 GA

               
       1476 AGA
          1 AGA

       1479 TGCCGGAAGT


Statistics
Matches: 68,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  67   68  1.00

ACGTcount: A:0.25, C:0.10, G:0.31, T:0.34


Consensus pattern (67 bp):   
AGAAGCATGGATGATTTCTAGTTATCGTTGCGACTTCAGTGTGAGAGTTGAGTAGCTATTGTGAT
GA
Done.