Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00720.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2703
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40


Found at i:889 original size:25 final size:25

Alignment explanation


    Indices: 852--899  Score: 71
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        842 CCAGGTAAGT

                                      
        852 CTTTCTCCTTCTTCCGTTCTTCATTC
          1 CTTTCTCCTTCTTCC-TTCTTCATTC

                             *     
        878 CTTT-TCCTTCTTCCTTTTTCAT
          1 CTTTCTCCTTCTTCCTTCTTCAT

        900 CTTCTAGCTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  24    7  0.33
  25   10  0.48
  26    4  0.19

ACGTcount: A:0.04, C:0.35, G:0.02, T:0.58


Consensus pattern (25 bp):   
CTTTCTCCTTCTTCCTTCTTCATTC
Done.