Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00751.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3645
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:2041 original size:28 final size:28

Alignment explanation


    Indices: 2009--2063  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1999 GTATCAAATA

                          *              
       2009 TTTGATTTCGT-TTTGTCGAAAAAAAAAG
          1 TTTGATTTCGTATTGGT-GAAAAAAAAAG

                    *                  
       2037 TTTGATTTTGTATTGGTGAAAAAAAAA
          1 TTTGATTTCGTATTGGTGAAAAAAAAA

       2064 TTAAGCGTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  28   20  0.83
  29    4  0.17

ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40


Consensus pattern (28 bp):   
TTTGATTTCGTATTGGTGAAAAAAAAAG
Done.