Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00753.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:36 original size:12 final size:12

Alignment explanation


    Indices: 14--53  Score: 53
    Period size: 12  Copynumber: 3.3  Consensus size: 12

          4 AGCTATTGCT

                *       
         14 AGAAAGAGGAGA
          1 AGAAGGAGGAGA

              *         
         26 AGGAGGAGGAGA
          1 AGAAGGAGGAGA

                    *   
         38 AGAAGGAGAAGA
          1 AGAAGGAGGAGA

                
         50 AGAA
          1 AGAA

         54 AAAGAAGAAG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (12 bp):   
AGAAGGAGGAGA
Done.