Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01373.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 336

Length: 560
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42


Found at i:385 original size:20 final size:20

Alignment explanation


    Indices: 355--397  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 20

        345 TTATTATTAT

                                
        355 ATTTTTTTTTGT-ATCAATA
          1 ATTTTTTTTTGTAATCAATA

                            *    
        374 ATTTTTTATTTGTAATTAATA
          1 ATTTTTT-TTTGTAATCAATA

               
        395 ATT
          1 ATT

        398 ATAAGAAGGT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    7  0.33
  20    5  0.24
  21    9  0.43

ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63


Consensus pattern (20 bp):   
ATTTTTTTTTGTAATCAATA

Done.