Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00771.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3356
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32


Found at i:538 original size:25 final size:24

Alignment explanation


    Indices: 487--535  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        477 TTATTAAGCG

                                    
        487 ATTCCTCATACAAAAACAAGTTGA
          1 ATTCCTCATACAAAAACAAGTTGA

                                    
        511 ATTCCTCATACAAAAACAAGTTGA
          1 ATTCCTCATACAAAAACAAGTTGA

             
        535 A
          1 A

        536 ATTTTGTATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24


Consensus pattern (24 bp):   
ATTCCTCATACAAAAACAAGTTGA
Done.