Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00776.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 943
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35


Found at i:327 original size:11 final size:10

Alignment explanation


    Indices: 295--332  Score: 51
    Period size: 11  Copynumber: 3.7  Consensus size: 10

        285 AATCTCTGAT

                      
        295 AATCTTGCCA
          1 AATCTTGCCA

                       
        305 AATCCTTG-CA
          1 AAT-CTTGCCA

                       
        315 AATCTTGCCCA
          1 AATCTTG-CCA

                   
        326 AATCTTG
          1 AATCTTG

        333 ATACCAATTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
   9    4  0.16
  10    8  0.32
  11   13  0.52

ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32


Consensus pattern (10 bp):   
AATCTTGCCA
Done.