Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00777.N6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580

Length: 967
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:184 original size:3 final size:3

Alignment explanation


    Indices: 176--215  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        166 AATCATTTGC

                                                                 
        176 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

        216 ATATAATTTT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.