Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00789.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3063
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:1516 original size:18 final size:18

Alignment explanation


    Indices: 1493--1532  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1483 GTCAGACATG

                   *         *
       1493 GAGGAAAGGGATATAATT
          1 GAGGAAAAGGATATAATC

                              
       1511 GAGGAAAAGGATATAATC
          1 GAGGAAAAGGATATAATC

                
       1529 GAGG
          1 GAGG

       1533 GTGATACTGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.45, C:0.03, G:0.35, T:0.17


Consensus pattern (18 bp):   
GAGGAAAAGGATATAATC
Done.