Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00798.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4199
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37


Found at i:3332 original size:28 final size:28

Alignment explanation


    Indices: 3301--3361  Score: 113
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       3291 TGGGTTTTCA

                  *                     
       3301 GTTTGCTCTCTTTGAGTTCCACTTTCGG
          1 GTTTGCCCTCTTTGAGTTCCACTTTCGG

                                        
       3329 GTTTGCCCTCTTTGAGTTCCACTTTCGG
          1 GTTTGCCCTCTTTGAGTTCCACTTTCGG

                 
       3357 GTTTG
          1 GTTTG

       3362 TTCTTCCTTG


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   32  1.00

ACGTcount: A:0.07, C:0.25, G:0.23, T:0.46


Consensus pattern (28 bp):   
GTTTGCCCTCTTTGAGTTCCACTTTCGG
Done.