Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00810.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2187
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32


Found at i:2052 original size:6 final size:6

Alignment explanation


    Indices: 2041--2082  Score: 50
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       2031 AGCTAGCTAG

                                       *      *              
       2041 GCTTTT GCTTTT G-TTTT CGCTTTC GCTTTC GCTTTT GCTTTT
          1 GCTTTT GCTTTT GCTTTT -GCTTTT GCTTTT GCTTTT GCTTTT

       2083 CCAAGGTCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   5    4  0.12
   6   25  0.78
   7    3  0.09

ACGTcount: A:0.00, C:0.21, G:0.17, T:0.62


Consensus pattern (6 bp):   
GCTTTT

Done.