Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00812.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3377
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:2274 original size:45 final size:45

Alignment explanation


    Indices: 2225--2393  Score: 157
    Period size: 45  Copynumber: 3.8  Consensus size: 45

       2215 AACAATATTA

                           *                  *          
       2225 ATCTTACATCTGAAACTGATACTATTTTGGAAGAGAAGAGGATTG
          1 ATCTTACATCTGAAAATGATACTATTTTGGAAGAAAAGAGGATTG

                 *       ** *        *                *    
       2270 ATCTTGCATCCATTCACA--ATACTCTTTTGGAAGAAAAGAGAATTG
          1 ATCTTACAT-C-TGAAAATGATACTATTTTGGAAGAAAAGAGGATTG

                       *          * *                     
       2315 ATCTTACATC-AAATAATGATATTCTTTTGGAAGAAAAGAGGATTG
          1 ATCTTACATCTGAA-AATGATACTATTTTGGAAGAAAAGAGGATTG

               * *                             
       2360 ATCCTGCATCTGAAAATGATACTAATTTT-GAAGA
          1 ATCTTACATCTGAAAATGATACT-ATTTTGGAAGA

       2394 GTATGGCTCT


Statistics
Matches: 98,  Mismatches: 19, Indels: 14
        0.75            0.15        0.11

Matches are distributed among these distances:
  42    1  0.01
  43    1  0.01
  44    1  0.01
  45   86  0.88
  46    7  0.07
  47    2  0.02

ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32


Consensus pattern (45 bp):   
ATCTTACATCTGAAAATGATACTATTTTGGAAGAAAAGAGGATTG
Done.