Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00816.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2838
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:2786 original size:28 final size:27

Alignment explanation


    Indices: 2746--2824  Score: 104
    Period size: 28  Copynumber: 2.8  Consensus size: 27

       2736 TTTATTCAGT

                *                        
       2746 AAAACTCCTATTTTATTGGGATTGAATCA
          1 AAAATTCC-ATTTTATTGGGATTGAAT-A

                           *           
       2775 AAAATTCCATTTTATGGGGATTGAATA
          1 AAAATTCCATTTTATTGGGATTGAATA

                  *                
       2802 AAAACTCCCATTTTATTGGGATT
          1 AAAA-TTCCATTTTATTGGGATT

       2825 CATGATTGTT


Statistics
Matches: 45,  Mismatches: 4, Indels: 3
        0.87            0.08        0.06

Matches are distributed among these distances:
  27    5  0.11
  28   33  0.73
  29    7  0.16

ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38


Consensus pattern (27 bp):   
AAAATTCCATTTTATTGGGATTGAATA
Done.