Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00823.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2396
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34


Found at i:1307 original size:17 final size:17

Alignment explanation


    Indices: 1285--1318  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1275 TACTTTAAAC

                   *         
       1285 AAATAGAGTAATAGAAT
          1 AAATAGACTAATAGAAT

                             
       1302 AAATAGACTAATAGAAT
          1 AAATAGACTAATAGAAT

       1319 CCTTATTAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.59, C:0.03, G:0.15, T:0.24


Consensus pattern (17 bp):   
AAATAGACTAATAGAAT
Done.