Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00824.F13

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4620
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:2129 original size:23 final size:22

Alignment explanation


    Indices: 2103--2154  Score: 68
    Period size: 23  Copynumber: 2.2  Consensus size: 22

       2093 TTCATTTAAC

                                   
       2103 TTAATCGAACATGTTCACGAACA
          1 TTAAT-GAACATGTTCACGAACA

                             *     
       2126 TTAAATGAACATGTTCATGAACA
          1 TT-AATGAACATGTTCACGAACA

                  
       2149 TATAAT
          1 T-TAAT

       2155 TGAAGATATA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  23   22  0.85
  24    4  0.15

ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31


Consensus pattern (22 bp):   
TTAATGAACATGTTCACGAACA
Done.