Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00825.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2765
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:1648 original size:17 final size:17

Alignment explanation


    Indices: 1626--1661  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1616 GTTTAGCAAG

                             
       1626 AATTTGTTAATAATTTT
          1 AATTTGTTAATAATTTT

                             
       1643 AATTTGTTAATAATTTT
          1 AATTTGTTAATAATTTT

              
       1660 AA
          1 AA

       1662 GTATTGTATC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56


Consensus pattern (17 bp):   
AATTTGTTAATAATTTT
Done.