Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00833.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4993
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:4044 original size:27 final size:26

Alignment explanation


    Indices: 3992--4044  Score: 70
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3982 TAATTTAAAA

                              * **    
       3992 TTTAATTTTATACTTATTTTTCTGTT
          1 TTTAATTTTATACTTATTCTAATGTT

                                       
       4018 TTTAATTTTATACTTTATTCTAATGTT
          1 TTTAATTTTATAC-TTATTCTAATGTT

       4045 ATGAAAAATT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  26   13  0.57
  27   10  0.43

ACGTcount: A:0.23, C:0.08, G:0.04, T:0.66


Consensus pattern (26 bp):   
TTTAATTTTATACTTATTCTAATGTT
Done.