Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00836.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37


Found at i:857 original size:14 final size:14

Alignment explanation


    Indices: 836--904  Score: 75
    Period size: 14  Copynumber: 4.9  Consensus size: 14

        826 CTTACCTAAT

                          
        836 TGTGCAAGTTGTGA
          1 TGTGCAAGTTGTGA

             *         ** 
        850 TTTGCAAGTTGCAA
          1 TGTGCAAGTTGTGA

                *         
        864 TGTGTAAGTTGTGA
          1 TGTGCAAGTTGTGA

             *       *  * 
        878 TTTGCAAGTCGTAA
          1 TGTGCAAGTTGTGA

                         
        892 TGTGCAAGTTGTG
          1 TGTGCAAGTTGTG

        905 CAAGTTGCAA


Statistics
Matches: 41,  Mismatches: 14, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  14   41  1.00

ACGTcount: A:0.23, C:0.09, G:0.30, T:0.38


Consensus pattern (14 bp):   
TGTGCAAGTTGTGA

Found at i:876 original size:28 final size:28

Alignment explanation


    Indices: 836--904  Score: 111
    Period size: 28  Copynumber: 2.5  Consensus size: 28

        826 CTTACCTAAT

                                   *    
        836 TGTGCAAGTTGTGATTTGCAAGTTGCAA
          1 TGTGCAAGTTGTGATTTGCAAGTCGCAA

                *                    *  
        864 TGTGTAAGTTGTGATTTGCAAGTCGTAA
          1 TGTGCAAGTTGTGATTTGCAAGTCGCAA

                         
        892 TGTGCAAGTTGTG
          1 TGTGCAAGTTGTG

        905 CAAGTTGCAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  28   37  1.00

ACGTcount: A:0.23, C:0.09, G:0.30, T:0.38


Consensus pattern (28 bp):   
TGTGCAAGTTGTGATTTGCAAGTCGCAA
Done.