Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00838.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2896
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2839 original size:25 final size:25

Alignment explanation


    Indices: 2804--2853  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2794 ATAGAGAGAG

                  *                  
       2804 AGAGAGCGTCAAATTTGGTATGTAA
          1 AGAGAGAGTCAAATTTGGTATGTAA

                                     
       2829 AGAGAGAGTCAAATTTGGTATGTAA
          1 AGAGAGAGTCAAATTTGGTATGTAA

       2854 GCTTGTATTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.38, C:0.06, G:0.28, T:0.28


Consensus pattern (25 bp):   
AGAGAGAGTCAAATTTGGTATGTAA
Done.