Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00839.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6226
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30


Found at i:5402 original size:29 final size:29

Alignment explanation


    Indices: 5340--5442  Score: 118
    Period size: 29  Copynumber: 3.6  Consensus size: 29

       5330 GTGACGAGAT

                   *              *   *  
       5340 TGGCACTGAGTGTGCGAGCTTGTAATGTA
          1 TGGCACTAAGTGTGCGAGCTTGGAATATA

            *                 *     *    
       5369 CGGCACTAAGTGTGCGAGTTTGGACTATA
          1 TGGCACTAAGTGTGCGAGCTTGGAATATA

                    *       *             
       5398 TGGCACTATGTGTGCGGGCTT-GAATCATA
          1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA

                            
       5427 TGGCACTAAGTGTGCG
          1 TGGCACTAAGTGTGCG

       5443 TGATTGAGTA


Statistics
Matches: 61,  Mismatches: 12, Indels: 2
        0.81            0.16        0.03

Matches are distributed among these distances:
  28    3  0.05
  29   58  0.95

ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29


Consensus pattern (29 bp):   
TGGCACTAAGTGTGCGAGCTTGGAATATA

Done.