Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00841.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3856
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:2107 original size:13 final size:13

Alignment explanation


    Indices: 2089--2114  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2079 ATGATTATTG

                         
       2089 AGATGGTTATGAA
          1 AGATGGTTATGAA

                         
       2102 AGATGGTTATGAA
          1 AGATGGTTATGAA

       2115 TTGAATAATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31


Consensus pattern (13 bp):   
AGATGGTTATGAA
Done.