Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00844.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3740
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34


Found at i:374 original size:21 final size:21

Alignment explanation


    Indices: 331--376  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        321 CGAATTTTGA

                            **   
        331 TTTTGATTTTGATTTTGGGTT
          1 TTTTGATTTTGATTTTAAGTT

                 *            *  
        352 TTTTGTTTTTGATTTTAATTT
          1 TTTTGATTTTGATTTTAAGTT

                
        373 TTTT
          1 TTTT

        377 TTTGTCAAAG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.11, C:0.00, G:0.15, T:0.74


Consensus pattern (21 bp):   
TTTTGATTTTGATTTTAAGTT
Done.