Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01382.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29


Found at i:1031 original size:2 final size:2

Alignment explanation


    Indices: 1024--1066  Score: 77
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       1014 GAAACCAATC

                                                    *                     
       1024 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

             
       1066 T
          1 T

       1067 CAAATCAATT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Found at i:1223 original size:20 final size:20

Alignment explanation


    Indices: 1186--1225  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1176 TAGATAAGCT

                     *          
       1186 TTTATATTTTTATTAAATAA
          1 TTTATATTTCTATTAAATAA

                                 
       1206 TTTATA-TTCTATTCAAATAA
          1 TTTATATTTCTATT-AAATAA

       1226 GTTCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    6  0.33
  20   12  0.67

ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55


Consensus pattern (20 bp):   
TTTATATTTCTATTAAATAA
Done.