Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00849.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 457

Length: 763
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31


Found at i:686 original size:46 final size:45

Alignment explanation


    Indices: 607--756  Score: 185
    Period size: 46  Copynumber: 3.3  Consensus size: 45

        597 TTCGCTGTAC

                *    *          *                         
        607 TTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAA
          1 TTGAAGTGTTTAAATGTTGTAAATTGA-ATGTTAAAGTGCTGCAAA

              *                                           
        653 TTAAAGTGTTTAAATGTTGTAAATTGAACTGTTAAAGTGCTGCAAA
          1 TTGAAGTGTTTAAATGTTGTAAATTGAA-TGTTAAAGTGCTGCAAA

                             *           *    *    *       
        699 TTGAAGTG-TTAAAGTGCTGTAAATTGGAGTGTTTAAGTACTGCAAA
          1 TTGAAGTGTTTAAA-TGTTGTAAATT-GAATGTTAAAGTGCTGCAAA

                        
        745 TTGAAGTGTTTA
          1 TTGAAGTGTTTA

        757 GTTGCTG


Statistics
Matches: 91,  Mismatches: 9, Indels: 7
        0.85            0.08        0.07

Matches are distributed among these distances:
  45    6  0.07
  46   80  0.88
  47    5  0.05

ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37


Consensus pattern (45 bp):   
TTGAAGTGTTTAAATGTTGTAAATTGAATGTTAAAGTGCTGCAAA

Found at i:756 original size:23 final size:23

Alignment explanation


    Indices: 628--754  Score: 150
    Period size: 23  Copynumber: 5.5  Consensus size: 23

        618 AAATGTTGTT

                                    
        628 AATTG-AGATGTTAAAGTGCTGCA
          1 AATTGAAG-TGTTAAAGTGCTGCA

                *              *  * 
        651 AATTAAAGTGTTTAAA-TGTTGTA
          1 AATTGAAGTG-TTAAAGTGCTGCA

                   *               
        674 AATTGAACTGTTAAAGTGCTGCA
          1 AATTGAAGTGTTAAAGTGCTGCA

                                 * 
        697 AATTGAAGTGTTAAAGTGCTGTA
          1 AATTGAAGTGTTAAAGTGCTGCA

                 *      *    *     
        720 AATTGGAGTGTTTAAGTACTGCA
          1 AATTGAAGTGTTAAAGTGCTGCA

                        
        743 AATTGAAGTGTT
          1 AATTGAAGTGTT

        755 TAGTTGCTG


Statistics
Matches: 87,  Mismatches: 14, Indels: 6
        0.81            0.13        0.06

Matches are distributed among these distances:
  22    5  0.06
  23   75  0.86
  24    7  0.08

ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35


Consensus pattern (23 bp):   
AATTGAAGTGTTAAAGTGCTGCA

Done.