Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00851.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1921
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:98 original size:6 final size:6

Alignment explanation


    Indices: 87--119  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         77 GTAAACTCCA

                                  *                
         87 CTTTTC CTTTTC CTTTTC CCTTTC C-TTTC CTTT
          1 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC CTTT

        120 AGATTCTTTG


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (6 bp):   
CTTTTC

Done.