Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01383.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2051
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:151 original size:18 final size:18

Alignment explanation


    Indices: 130--207  Score: 66
    Period size: 18  Copynumber: 4.3  Consensus size: 18

        120 TACGGGTCCT

                   *       *  
        130 CCTGCAAGTACAGATGCA
          1 CCTGCAACTACAGATCCA

                       *      
        148 CCTGCAACTACGGATCCA
          1 CCTGCAACTACAGATCCA

               *    *  *     *
        166 CCTACAACAACTGATCCG
          1 CCTGCAACTACAGATCCA

               *   *      *   
        184 CCTACAAGTACAGAGCCA
          1 CCTGCAACTACAGATCCA

                  
        202 CCTGCA
          1 CCTGCA

        208 GGTGATGTAG


Statistics
Matches: 47,  Mismatches: 13, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  18   47  1.00

ACGTcount: A:0.32, C:0.36, G:0.17, T:0.15


Consensus pattern (18 bp):   
CCTGCAACTACAGATCCA

Found at i:1572 original size:81 final size:81

Alignment explanation


    Indices: 1442--1636  Score: 223
    Period size: 81  Copynumber: 2.4  Consensus size: 81

       1432 TCCCCACCTT

                      *             *     *    *  *   *         *      * *   
       1442 TAAAGAAAGAGAGTGAAGAAGCTTCCAAAAATGAAGTCGAAGCTCCTGAAGCCAACCCAGCTTCA
          1 TAAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATCA

                      *     
       1507 CAAGAAGTTCCACCA-
         66 CAAGAAGTTCAACCAG

              *                                          *          *        
       1522 TCGAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATTCTGAAGCAAAGCCACCATC
          1 T-AAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATC

                      *      
       1587 ACAAGAAGTTGAACCAG
         65 ACAAGAAGTTCAACCAG

                             *                
       1604 TAAAGAAAGATAGTGAACAAGCTTTG-AAAACTG
          1 TAAAGAAAGATAGTGAAGAAGC-TTGCAAAACTG

       1637 TTGTCAAGGA


Statistics
Matches: 96,  Mismatches: 16, Indels: 5
        0.82            0.14        0.04

Matches are distributed among these distances:
  80    1  0.01
  81   91  0.95
  82    4  0.04

ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16


Consensus pattern (81 bp):   
TAAAGAAAGATAGTGAAGAAGCTTGCAAAACTGAAATCAAAGATCCTGAAGCAAACCCACCATCA
CAAGAAGTTCAACCAG
Done.