Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00860.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26


Found at i:1188 original size:3 final size:3

Alignment explanation


    Indices: 1180--1210  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       1170 CCGAGTTCTT

                                                      
       1180 TGA TGA TGA TGA TGA TGA TGA TGA TGA -GA TG
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG

       1211 GTCCCTGATG


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2    2  0.07
   3   25  0.93

ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32


Consensus pattern (3 bp):   
TGA

Done.