Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01387.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5141
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:3596 original size:23 final size:24

Alignment explanation


    Indices: 3552--3599  Score: 71
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       3542 GAAGATGTGC

                             *       
       3552 AAAATTCGGCAGTCAAGGGGGAAAA
          1 AAAATTCGGCAG-CAAGAGGGAAAA

                                    
       3577 AAAATTCGGCAG-AAGAGGGAAAA
          1 AAAATTCGGCAGCAAGAGGGAAAA

       3600 TAAAGATAGA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23   10  0.45
  25   12  0.55

ACGTcount: A:0.48, C:0.10, G:0.31, T:0.10


Consensus pattern (24 bp):   
AAAATTCGGCAGCAAGAGGGAAAA
Done.