Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01388.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 555

Length: 925
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:103 original size:16 final size:15

Alignment explanation


    Indices: 82--137  Score: 58
    Period size: 16  Copynumber: 3.5  Consensus size: 15

         72 TAGTCAGCCT

                            
         82 CTCCCTCCGTCGACCG
          1 CTCCCTCCGTCGA-CG

                   *       
         98 CTCCCTCTGTCGACG
          1 CTCCCTCCGTCGACG

             *   *           
        113 TTTCCTTCCGTCGAACG
          1 -CTCCCTCCGTCG-ACG

                    
        130 CTCCCTCC
          1 CTCCCTCC

        138 ATCGCTCACT


Statistics
Matches: 32,  Mismatches: 6, Indels: 4
        0.76            0.14        0.10

Matches are distributed among these distances:
  15    2  0.06
  16   27  0.84
  17    3  0.09

ACGTcount: A:0.07, C:0.50, G:0.16, T:0.27


Consensus pattern (15 bp):   
CTCCCTCCGTCGACG
Done.