Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00895.F14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4284
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32


Found at i:95 original size:28 final size:28

Alignment explanation


    Indices: 14--95  Score: 78
    Period size: 28  Copynumber: 2.9  Consensus size: 28

          4 ATGGAATAAT

                 *                      
         14 AGAAATAGAATAAGAAATTTA-AAAAAA
          1 AGAAAAAGAATAAGAAATTTATAAAAAA

             *      *     *               
         41 AAAAGAAACAATAACAAATTT-TCAAAAAA
          1 AGAA-AAAGAATAAGAAATTTAT-AAAAAA

            *         *               
         70 GGAAAAAGAAAAAGAAATTTATAAAA
          1 AGAAAAAGAATAAGAAATTTATAAAA

         96 GAAACGGAGA


Statistics
Matches: 42,  Mismatches: 9, Indels: 7
        0.72            0.16        0.12

Matches are distributed among these distances:
  27    3  0.07
  28   30  0.71
  29    9  0.21

ACGTcount: A:0.70, C:0.04, G:0.10, T:0.17


Consensus pattern (28 bp):   
AGAAAAAGAATAAGAAATTTATAAAAAA
Done.