Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00898.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:592 original size:6 final size:6

Alignment explanation


    Indices: 583--613  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        573 AACTCCAACT

                                                
        583 GCAGTA GCAGTA GCAGTA GCAGTA GCAGTA G
          1 GCAGTA GCAGTA GCAGTA GCAGTA GCAGTA G

        614 GGGATCAACA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.32, C:0.16, G:0.35, T:0.16


Consensus pattern (6 bp):   
GCAGTA

Done.