Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00901.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1744
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31


Found at i:945 original size:18 final size:18

Alignment explanation


    Indices: 922--980  Score: 68
    Period size: 18  Copynumber: 3.3  Consensus size: 18

        912 GTGCACATCA

                               
        922 TCATGATCAT-GATCATGG
          1 TCATGATCATGGA-CATGG

                   *          
        940 TCATGATGATGGACATGG
          1 TCATGATCATGGACATGG

                               
        958 TCAT-AGTCATGGACATGG
          1 TCATGA-TCATGGACATGG

            *    
        976 GCATG
          1 TCATG

        981 GAGGTGAGGA


Statistics
Matches: 35,  Mismatches: 3, Indels: 5
        0.81            0.07        0.12

Matches are distributed among these distances:
  17    1  0.03
  18   32  0.91
  19    2  0.06

ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29


Consensus pattern (18 bp):   
TCATGATCATGGACATGG

Found at i:951 original size:12 final size:12

Alignment explanation


    Indices: 921--968  Score: 51
    Period size: 12  Copynumber: 4.0  Consensus size: 12

        911 CGTGCACATC

                  *     
        921 ATCATGATCATG
          1 ATCATGGTCATG

                        
        933 ATCATGGTCATG
          1 ATCATGGTCATG

              *    *    
        945 ATGATGGACATG
          1 ATCATGGTCATG

            *    *      
        957 GTCATAGTCATG
          1 ATCATGGTCATG

        969 GACATGGGCA


Statistics
Matches: 29,  Mismatches: 7, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31


Consensus pattern (12 bp):   
ATCATGGTCATG
Done.