Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00901.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1975
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33


Found at i:1176 original size:18 final size:18

Alignment explanation


    Indices: 1153--1211  Score: 68
    Period size: 18  Copynumber: 3.3  Consensus size: 18

       1143 GTGCACATCA

                               
       1153 TCATGATCAT-GATCATGG
          1 TCATGATCATGGA-CATGG

                   *          
       1171 TCATGATGATGGACATGG
          1 TCATGATCATGGACATGG

                               
       1189 TCAT-AGTCATGGACATGG
          1 TCATGA-TCATGGACATGG

            *    
       1207 GCATG
          1 TCATG

       1212 GAGGTGAGGA


Statistics
Matches: 35,  Mismatches: 3, Indels: 5
        0.81            0.07        0.12

Matches are distributed among these distances:
  17    1  0.03
  18   32  0.91
  19    2  0.06

ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29


Consensus pattern (18 bp):   
TCATGATCATGGACATGG

Found at i:1182 original size:12 final size:12

Alignment explanation


    Indices: 1152--1199  Score: 51
    Period size: 12  Copynumber: 4.0  Consensus size: 12

       1142 CGTGCACATC

                  *     
       1152 ATCATGATCATG
          1 ATCATGGTCATG

                        
       1164 ATCATGGTCATG
          1 ATCATGGTCATG

              *    *    
       1176 ATGATGGACATG
          1 ATCATGGTCATG

            *    *      
       1188 GTCATAGTCATG
          1 ATCATGGTCATG

       1200 GACATGGGCA


Statistics
Matches: 29,  Mismatches: 7, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31


Consensus pattern (12 bp):   
ATCATGGTCATG
Done.