Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00913.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5856
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33


Found at i:3901 original size:111 final size:111

Alignment explanation


    Indices: 3661--3991  Score: 594
    Period size: 111  Copynumber: 3.0  Consensus size: 111

       3651 TAATTGTAAA

                                                 *  *    *                   
       3661 ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAGTGACAGAGTAAAATT-TTCCCATTAAT
          1 ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT

                *                      *                  
       3725 CATATCATCCTGAAGTTCTCAT-AATTGTGGAGATTTTAAGTTTCC
         66 CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC

                           *                                                 
       3770 ACATTTGAGGCTCTTTTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT
          1 ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT

                                                          
       3835 CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC
         66 CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC

                                                                             
       3881 ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT
          1 ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT

                                                          
       3946 CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC
         66 CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC

       3992 TGTTCAACTT


Statistics
Matches: 213,  Mismatches: 7, Indels: 2
        0.96            0.03        0.01

Matches are distributed among these distances:
 109   49  0.23
 110   32  0.15
 111  132  0.62

ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40


Consensus pattern (111 bp):   
ACATTTGAGGCTCTTGTTGTTATGTGTATAATTTGGAATGGCAGATTAAAATTCTTCCCATTAAT
CATACCATCCTGAAGTTCTCATAAATTCTGGAGATTTTAAGTTTCC
Done.