Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00938.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1725
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:473 original size:64 final size:65

Alignment explanation


    Indices: 396--525  Score: 244
    Period size: 64  Copynumber: 2.0  Consensus size: 65

        386 TGCAAAACAG

                                                                             
        396 ATTGAAAAAATTTCCACCATCAAGTTGACAGACGAAGAAAGACGGTAAATGGTCCTAATTGAACT
          1 ATTGAAAAAATTTCCACCATCAAGTTGACAGACGAAGAAAGACGGTAAATGGTCCTAATTGAACT

                                                            *                
        461 ATTG-AAAAATTTCCACCATCAAGTTGACAGACGAAGAAAGACGGTAACTGGTCCTAATTGAACT
          1 ATTGAAAAAATTTCCACCATCAAGTTGACAGACGAAGAAAGACGGTAAATGGTCCTAATTGAACT

             
        525 A
          1 A

        526 AGTATTTCAT


Statistics
Matches: 64,  Mismatches: 1, Indels: 1
        0.97            0.02        0.02

Matches are distributed among these distances:
  64   60  0.94
  65    4  0.06

ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23


Consensus pattern (65 bp):   
ATTGAAAAAATTTCCACCATCAAGTTGACAGACGAAGAAAGACGGTAAATGGTCCTAATTGAACT
Done.