Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00939.N10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2091
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:1290 original size:79 final size:79

Alignment explanation


    Indices: 1151--1296  Score: 215
    Period size: 79  Copynumber: 1.8  Consensus size: 79

       1141 ATACATACTG

                                                      *            *         
       1151 CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGATGGTATAAGGTATCTGATAGAAC
          1 CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGAGGGTATAAGGTATATGATAGAAC

                          
       1216 ACAAACATACACTA
         66 ACAAACATACACTA

                              *         *       *                            
       1230 CATTGAACATCA-CTCGGTCTAACTAGCGTTTGAGAGCATGGAGGGTAT-AGGCTATATGATAGA
          1 CATTGAACATCAGCT-GGCCTAACTAGCATTTGAGAACATGGAGGGTATAAGG-TATATGATAGA

                
       1293 ACAC
         64 ACAC

       1297 TTATAAATGT


Statistics
Matches: 60,  Mismatches: 5, Indels: 4
        0.87            0.07        0.06

Matches are distributed among these distances:
  78    5  0.08
  79   55  0.92

ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25


Consensus pattern (79 bp):   
CATTGAACATCAGCTGGCCTAACTAGCATTTGAGAACATGGAGGGTATAAGGTATATGATAGAAC
ACAAACATACACTA
Done.