Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00940.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4570
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:3885 original size:25 final size:25

Alignment explanation


    Indices: 3856--3906  Score: 75
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       3846 CAAAGGAAAA

                   **                
       3856 TCCTAATCTAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

                          *          
       3881 TCCTAATAGAATTCTTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

             
       3906 T
          1 T

       3907 TTATAAGGAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41


Consensus pattern (25 bp):   
TCCTAATAGAATTCCTAATTTAAAG
Done.