Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00979.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 682
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32


Found at i:479 original size:27 final size:27

Alignment explanation


    Indices: 438--497  Score: 93
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        428 GAGGAAGCGT

                                       
        438 TCTGGTGGCTATGCCACAAATATCTGA
          1 TCTGGTGGCTATGCCACAAATATCTGA

                      *       *       *
        465 TCTGGTGGCTCTGCCACATATATCTGT
          1 TCTGGTGGCTATGCCACAAATATCTGA

                  
        492 TCTGGT
          1 TCTGGT

        498 AACTCTGTCA


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35


Consensus pattern (27 bp):   
TCTGGTGGCTATGCCACAAATATCTGA

Found at i:521 original size:26 final size:27

Alignment explanation


    Indices: 449--522  Score: 96
    Period size: 27  Copynumber: 2.8  Consensus size: 27

        439 CTGGTGGCTA

                   *       *      **   
        449 TGCCACAAATATCTGATCTGGTGGCTC
          1 TGCCACATATATCTGTTCTGGTAACTC

                                       
        476 TGCCACATATATCTGTTCTGGTAACTC
          1 TGCCACATATATCTGTTCTGGTAACTC

              *                  
        503 TGTCACAT-TATCTGTTCTGG
          1 TGCCACATATATCTGTTCTGG

        523 CAGCCATGCT


Statistics
Matches: 42,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  26   12  0.29
  27   30  0.71

ACGTcount: A:0.20, C:0.24, G:0.19, T:0.36


Consensus pattern (27 bp):   
TGCCACATATATCTGTTCTGGTAACTC
Done.