Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00984.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2933
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29


Found at i:2907 original size:18 final size:22

Alignment explanation


    Indices: 2864--2907  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 22

       2854 CTTAGTTGTA

                                  
       2864 AATTATGAATACTTATGCTAGT
          1 AATTATGAATACTTATGCTAGT

                                  
       2886 -ATTAT-AA-ACTT-TGCTA-T
          1 AATTATGAATACTTATGCTAGT

                 
       2903 AATTA
          1 AATTA

       2908 GAAGATATCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 6
        0.78            0.00        0.22

Matches are distributed among these distances:
  17    1  0.05
  18    9  0.43
  19    4  0.19
  20    2  0.10
  21    5  0.24

ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43


Consensus pattern (22 bp):   
AATTATGAATACTTATGCTAGT
Done.